HL_6OM6_102

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

6OM6|1|3|U|87, 6OM6|1|3|U|89

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OM6_102 not in the Motif Atlas

Geometric match to HL_6CZR_076

Geometric discrepancy: 0.3674

The information below is about HL_6CZR_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34168.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

11

Unit IDs

6OM6|1|3|G|85
6OM6|1|3|G|86
6OM6|1|3|U|87
6OM6|1|3|C|88
6OM6|1|3|U|89
6OM6|1|3|C|90
6OM6|1|3|C|91

Current chains

Chain 3

5S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain M

50S ribosomal protein L16

Chain V

50S ribosomal protein L25