HL_6OM7_023

3D structure

PDB id

6OM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

6OM7|1|S2|C|835, 6OM7|1|S2|C|840

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OM7_023 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3962

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6OM7|1|S2|C|833
6OM7|1|S2|C|834
6OM7|1|S2|C|835
6OM7|1|S2|G|836
6OM7|1|S2|A|837
6OM7|1|S2|G|838
6OM7|1|S2|C|839
6OM7|1|S2|C|840
6OM7|1|S2|G|841

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24