RNA 3D Hub //

6OM7 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6OM7_0011/D/47:56Pseudoknot with intercalation
geometric
HL_4V9F_001
HL_17803.1
HL_6OM7_1351/D/55:62No text annotation
geometric
HL_1ET4_001
NA
HL_6OM7_0031/D/107:112No text annotation
homologous
HL_5TBW_075
NA
HL_6OM7_0071/S2/7:17No text annotation
homologous
HL_4V88_186
NA
HL_6OM7_0131/S2/377:387tRNA D-loop
geometric
HL_6UFM_001
HL_04642.3
HL_6OM7_0201/S2/618:623GNRA variation
homologous
HL_4V88_200
NA
HL_6OM7_1361/S2/957:966No text annotation
homologous
HL_8CRE_210
HL_38491.2
HL_6OM7_0261/S2/994:999GNRA
homologous
HL_4V88_207
NA
HL_6OM7_0271/S2/1054:1064No text annotation
homologous
HL_4V88_208
NA
HL_6OM7_0291/S2/1141:1146GNRA
homologous
HL_4V88_210
NA
HL_6OM7_0301/S2/1178:1183GNRA
homologous
HL_4V88_211
NA
HL_6OM7_0311/S2/1245:1254No text annotation
homologous
HL_8P9A_215
HL_97521.1
HL_6OM7_0411/S2/1847:1852GNRA variation
homologous
HL_4V88_222
NA
HL_6OM7_0511/t/362:367GNRA
homologous
HL_8C3A_010
NA
HL_6OM7_0591/t/1300:1309T-loop with 2 stacked bulged bases
homologous
HL_5TBW_014
NA
HL_6OM7_0661/t/1575:1584No text annotation
homologous
HL_5TBW_020
NA
HL_6OM7_0671/t/1609:1617No text annotation
homologous
HL_8C3A_021
NA
HL_6OM7_0791/t/2437:2442GNRA variation
homologous
HL_5TBW_033
NA
HL_6OM7_0811/t/2502:2511No text annotation
homologous
HL_5TBW_035
NA
HL_6OM7_0831/t/2557:2562GNRA
homologous
HL_8C3A_036
NA
HL_6OM7_0851/t/2643:2649No text annotation
homologous
HL_8C3A_038
NA
HL_6OM7_0871/t/2717:2721No text annotation
homologous
HL_8C3A_040
NA
HL_6OM7_0881/t/2771:2778No text annotation
homologous
HL_8C3A_041
NA
HL_6OM7_0891/t/2789:2795GNRA
homologous
HL_5TBW_042
NA
HL_6OM7_0901/t/2851:2856UNCG
homologous
HL_5TBW_043
NA
HL_6OM7_0921/t/3585:3589No text annotation
homologous
HL_8C3A_045
NA
HL_6OM7_0931/t/3610:3620No text annotation
homologous
HL_5TBW_046
NA
HL_6OM7_0941/t/3639:3645GNRA
homologous
HL_8C3A_047
NA
HL_6OM7_0961/t/3728:3738No text annotation
homologous
HL_5TBW_049
NA
HL_6OM7_0971/t/3767:3775No text annotation
homologous
HL_5TBW_050
NA
HL_6OM7_0981/t/3844:3853No text annotation
homologous
HL_5TBW_051
NA
HL_6OM7_1021/t/4155:4163No text annotation
homologous
HL_5TBW_054
NA
HL_6OM7_1091/t/4379:4387No text annotation
homologous
HL_5TBW_061
NA
HL_6OM7_1101/t/4436:4443No text annotation
homologous
HL_5TBW_062
NA
HL_6OM7_1111/t/4459:4465No text annotation
homologous
HL_5TBW_063
NA
HL_6OM7_1121/t/4502:4507GNRA
homologous
HL_5TBW_064
NA
HL_6OM7_1151/t/4650:4664No text annotation
homologous
HL_8C3A_068
NA
HL_6OM7_1211/u/31:39tRNA anticodon loop
homologous
HL_6UFG_007
HL_81376.2
HL_6OM7_1241/v/31:39tRNA anticodon loop
homologous
HL_6UFG_007
HL_81376.2

Problematic loops

#loop idProblemSequence
HL_6OM7_002No text annotation
HL_6OM7_004No text annotation
HL_6OM7_126No text annotation
HL_6OM7_005No text annotation
HL_6OM7_006GNRA
HL_6OM7_008No text annotation
HL_6OM7_009GNRA
HL_6OM7_010No text annotation
HL_6OM7_011T-loop with 1 bulged base
HL_6OM7_012No text annotation
HL_6OM7_014No text annotation
HL_6OM7_015No text annotation
HL_6OM7_016UNCG
HL_6OM7_017No text annotation
HL_6OM7_127No text annotation
HL_6OM7_018No text annotation
HL_6OM7_019No text annotation
HL_6OM7_021UNCG variation
HL_6OM7_022No text annotation
HL_6OM7_023No text annotation
HL_6OM7_024No text annotation
HL_6OM7_128No text annotation
HL_6OM7_025No text annotation
HL_6OM7_028No text annotation
HL_6OM7_129No text annotation
HL_6OM7_130No text annotation
HL_6OM7_032No text annotation
HL_6OM7_033No text annotation
HL_6OM7_034No text annotation
HL_6OM7_035No text annotation
HL_6OM7_036GNRA
HL_6OM7_037GNRA
HL_6OM7_038No text annotation
HL_6OM7_039No text annotation
HL_6OM7_040No text annotation
HL_6OM7_131No text annotation
HL_6OM7_042No text annotation
HL_6OM7_043No text annotation
HL_6OM7_044No text annotation
HL_6OM7_045No text annotation
HL_6OM7_046No text annotation
HL_6OM7_047No text annotation
HL_6OM7_048No text annotation
HL_6OM7_049No text annotation
HL_6OM7_050Pseudoknot geometry
HL_6OM7_052GNRA
HL_6OM7_053No text annotation
HL_6OM7_054Externally structured
HL_6OM7_055No text annotation
HL_6OM7_056No text annotation
HL_6OM7_057No text annotation
HL_6OM7_058No text annotation
HL_6OM7_060No text annotation
HL_6OM7_132No text annotation
HL_6OM7_061GNRA
HL_6OM7_062No text annotation
HL_6OM7_133No text annotation
HL_6OM7_063No text annotation
HL_6OM7_064UNCG variation
HL_6OM7_065GNRA
HL_6OM7_068Externally structured
HL_6OM7_069No text annotation
HL_6OM7_070No text annotation
HL_6OM7_071GNRA
HL_6OM7_072No text annotation
HL_6OM7_073Mini UNCG related
HL_6OM7_074No text annotation
HL_6OM7_075No text annotation
HL_6OM7_076GNRA
HL_6OM7_077T-loop with 2 stacked bulged bases
HL_6OM7_078Pseudoknot geometry with 3' bulge
HL_6OM7_080No text annotation
HL_6OM7_082UNCG variation
HL_6OM7_084No text annotation
HL_6OM7_086No text annotation
HL_6OM7_091No text annotation
HL_6OM7_095GNRA
HL_6OM7_099No text annotation
HL_6OM7_100No text annotation
HL_6OM7_101Mini UNCG
HL_6OM7_134No text annotation
HL_6OM7_103No text annotation
HL_6OM7_104No text annotation
HL_6OM7_105Pseudoknot geometry
HL_6OM7_106No text annotation
HL_6OM7_107GNRA
HL_6OM7_108No text annotation
HL_6OM7_113GNRA
HL_6OM7_114Ribsomal LSU H95
HL_6OM7_116No text annotation
HL_6OM7_117No text annotation
HL_6OM7_118No text annotation
HL_6OM7_119No text annotation
HL_6OM7_120No text annotation
HL_6OM7_122T-loop with 2 stacked bulged bases
HL_6OM7_123No text annotation
HL_6OM7_125T-loop with 2 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6OM7_2941/D/44:64,
1/D/95:99		No text annotation
IL_6OM7_0061/D/143:144,
1/t/12:14		Single bulged U
homologous
IL_5TBW_003
NA
IL_6OM7_0071/D/149:151,
1/t/6:7		Single bulged C
geometric
IL_7A0S_032
IL_05642.2
IL_6OM7_0121/E/71:78,
1/E/98:104		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_6OM7_0151/S2/23:25,
1/S2/649:651		Isolated non-canonical cWW pair
geometric
IL_4M4O_001
IL_01003.2
IL_6OM7_0191/S2/41:47,
1/S2/479:481		No text annotation
homologous
IL_4V88_387
NA
IL_6OM7_0201/S2/49:51,
1/S2/476:477		Minor groove platform
homologous
IL_4V88_388
NA
IL_6OM7_0331/S2/359:364,
1/S2/396:403		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_6OM7_0341/S2/366:371,
1/S2/393:394		No text annotation
geometric
IL_4ERD_001
IL_44609.2
IL_6OM7_0351/S2/411:413,
1/S2/424:429		No text annotation
homologous
IL_4V88_404
NA
IL_6OM7_0411/S2/563:565,
1/S2/585:592		No text annotation
homologous
IL_8C3A_420
NA
IL_6OM7_0431/S2/599:606,
1/S2/636:637		SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_6OM7_0451/S2/611:617,
1/S2/624:632		Kink-turn related
homologous
IL_4V88_415
NA
IL_6OM7_0461/S2/663:665,
1/S2/1162:1164		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_01003.2
IL_6OM7_0471/S2/665:671,
1/S2/1161:1162		No text annotation
geometric
IL_6CZR_134
NA
IL_6OM7_0481/S2/673:675,
1/S2/1030:1032		Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_6OM7_0491/S2/676:680,
1/S2/1025:1029		tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_6OM7_3001/S2/928:931,
1/S2/1010:1013		Tandem non-canonical cWW pairs
homologous
IL_8CRE_433
IL_15225.2
IL_6OM7_0581/S2/931:935,
1/S2/1007:1010		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_6OM7_3011/S2/942:945,
1/S2/981:984		Tandem non-canonical cWW pairs
homologous
IL_8CRE_435
IL_15225.2
IL_6OM7_0601/S2/952:956,
1/S2/967:974		Kink-turn
geometric
IL_4V88_434
NA
IL_6OM7_0611/S2/1042:1047,
1/S2/1071:1073		Other IL
homologous
IL_4V88_435
NA
IL_6OM7_0621/S2/1047:1051,
1/S2/1067:1071		tSH-tHW-tHS
geometric
IL_4V88_436
NA
IL_6OM7_0671/S2/1168:1175,
1/S2/1186:1191		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_6OM7_3031/S2/1203:1204,
1/S2/1694:1696		Single bulged A
homologous
IL_8CRE_443
IL_14190.2
IL_6OM7_2661/S2/1206:1208,
1/S2/1691:1692		Single bulged G
homologous
IL_8C3A_448
NA
IL_6OM7_2691/S2/1329:1335,
1/S2/1492:1500		No text annotation
homologous
IL_8P9A_439
IL_99893.1
IL_6OM7_0781/S2/1333:1335,
1/S2/1492:1498		Minor groove platform with extra cWW
homologous
IL_4V88_451
NA
IL_6OM7_0891/S2/1700:1702,
1/S2/1833:1836		No text annotation
homologous
IL_4V88_463
NA
IL_6OM7_0901/S2/1702:1705,
1/S2/1829:1833		No text annotation
homologous
IL_8C3A_471
NA
IL_6OM7_0911/S2/1706:1708,
1/S2/1826:1828		Isolated non-canonical cWW pair
homologous
IL_4V88_465
NA
IL_6OM7_0921/S2/1708:1711,
1/S2/1822:1826		No text annotation
homologous
IL_8CRE_469
IL_73099.1
IL_6OM7_3051/S2/1714:1716,
1/S2/1817:1819		Isolated non-canonical cWW pair
homologous
IL_8P9A_456
IL_01003.2
IL_6OM7_0941/S2/1717:1722,
1/S2/1811:1816		No text annotation
IL_6OM7_3061/S2/1717:1728,
1/S2/1806:1816		No text annotation
IL_6OM7_0951/S2/1722:1726,
1/S2/1807:1811		No text annotation
geometric
IL_5TBW_121
NA
IL_6OM7_1041/t/81:88,
1/t/96:102		No text annotation
homologous
IL_8C3A_006
NA
IL_6OM7_1051/t/118:124,
1/t/143:151		No text annotation
IL_6OM7_1471/t/1504:1508,
1/t/1630:1637		tHW-tHW cross-strand stack
homologous
IL_5TBW_028
NA
IL_6OM7_1481/t/1532:1533,
1/t/1558:1560		Single bulged G
geometric
IL_4V9F_026
IL_28408.2
IL_6OM7_1491/t/1533:1537,
1/t/1554:1558		Triple sheared
homologous
IL_8C3A_033
NA
IL_6OM7_3091/t/1568:1571,
1/t/1587:1589		No text annotation
homologous
IL_8CRE_034
NA
IL_6OM7_1521/t/1606:1608,
1/t/1618:1622		No text annotation
homologous
IL_8C3A_036
NA
IL_6OM7_3101/t/1719:1720,
1/t/1772:1774		Minor groove platform
homologous
IL_8CRE_042
NA
IL_6OM7_1591/t/1721:1726,
1/t/1768:1771		C-loop with bulged stacked A's
homologous
IL_8C3A_043
NA
IL_6OM7_1711/t/1907:1925,
1/t/2019:2039		No text annotation
IL_6OM7_1801/t/2337:2343,
1/t/3829:3834		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_6OM7_1821/t/2394:2399,
1/t/2405:2408		No text annotation
IL_6OM7_1831/t/2425:2429,
1/t/2488:2493		UAA/GAN
homologous
IL_8C3A_067
NA
IL_6OM7_1851/t/2521:2526,
1/t/2751:2753		Isolated non-canonical cWW pair
geometric
IL_4RUM_001
IL_76400.1
IL_6OM7_1861/t/2528:2529,
1/t/2747:2749		Single bulged U
geometric
IL_6JQ6_006
IL_97561.2
IL_6OM7_1871/t/2568:2572,
1/t/2731:2735		Triple sheared
homologous
IL_5TBW_067
NA
IL_6OM7_1881/t/2592:2593,
1/t/2703:2705		Single bulged A
geometric
IL_7A0S_012
IL_14190.2
IL_6OM7_1891/t/2593:2594,
1/t/2701:2703		Single stack bend
homologous
IL_5TBW_070
NA
IL_6OM7_1911/t/2630:2632,
1/t/2660:2661		Single bulged G
geometric
IL_5J7L_019
NA
IL_6OM7_1921/t/2635:2641,
1/t/2651:2657		Kink-turn
homologous
IL_5TBW_073
NA
IL_6OM7_1941/t/2811:2817,
1/t/3821:3824		No text annotation
homologous
IL_5TBW_074
NA
IL_6OM7_1951/t/2823:2825,
1/t/3813:3815		No text annotation
homologous
IL_8C3A_081
NA
IL_6OM7_1961/t/2826:2829,
1/t/3811:3812		Major groove platform; stack outside cWW
homologous
IL_8C3A_082
NA
IL_6OM7_2861/t/2826:2834,
1/t/3808:3812		No text annotation
homologous
IL_8C3A_484
NA
IL_6OM7_1971/t/2829:2834,
1/t/3808:3811		No text annotation
homologous
IL_8C3A_083
NA
IL_6OM7_1981/t/2846:2851,
1/t/2856:2862		No text annotation
homologous
IL_8C3A_084
NA
IL_6OM7_2001/t/2875:2876,
1/t/3573:3576		No text annotation
homologous
IL_8C3A_086
NA
IL_6OM7_2011/t/3603:3604,
1/t/3798:3800		Single bulged A
homologous
IL_8C3A_087
NA
IL_6OM7_2021/t/3631:3636,
1/t/3648:3655		Kink-turn related
homologous
IL_5TBW_083
NA
IL_6OM7_2031/t/3671:3674,
1/t/3720:3721		No text annotation
homologous
IL_8C3A_089
NA
IL_6OM7_2041/t/3675:3676,
1/t/3716:3719		Major groove intercalation
geometric
IL_7A0S_067
IL_77710.1
IL_6OM7_2051/t/3679:3685,
1/t/3710:3713		No text annotation
IL_6OM7_2061/t/3686:3692,
1/t/3703:3709		No text annotation
homologous
IL_5TBW_088
NA
IL_6OM7_2071/t/3751:3752,
1/t/3782:3785		Bulged stacked bases
homologous
IL_5TBW_089
NA
IL_6OM7_2081/t/3752:3763,
1/t/3779:3782		No text annotation
geometric
IL_5TBW_090
NA
IL_6OM7_2111/t/3884:3886,
1/t/4350:4351		Single bulged U
homologous
IL_8C3A_098
NA
IL_6OM7_2121/t/3887:3888,
1/t/4346:4349		Minor groove platform
homologous
IL_5TBW_094
NA
IL_6OM7_2131/t/3898:3900,
1/t/4143:4146		Isolated tHS basepair with bulges
homologous
IL_5TBW_095
NA
IL_6OM7_2151/t/4052:4058,
1/t/4123:4126		No text annotation
homologous
IL_5TBW_096
NA
IL_6OM7_2161/t/4153:4154,
1/t/4164:4166		Single bulged A
homologous
IL_5TBW_098
NA
IL_6OM7_2201/t/4362:4363,
1/t/4404:4406		Major groove platform
homologous
IL_5TBW_102
NA
IL_6OM7_2211/t/4363:4365,
1/t/4402:4404		Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_6OM7_2261/t/4418:4420,
1/t/4482:4486		Isolated non-canonical cWW with bulges
homologous
IL_5TBW_108
NA
IL_6OM7_2271/t/4420:4421,
1/t/4479:4482		Multiple bulged bases
geometric
IL_5TBW_109
NA
IL_6OM7_2281/t/4428:4430,
1/t/4451:4453		Isolated non-canonical cWW pair
homologous
IL_8C3A_118
NA
IL_6OM7_2291/t/4430:4432,
1/t/4447:4451		No text annotation
IL_6OM7_2301/t/4457:4459,
1/t/4465:4467		Isolated non-canonical cWW pair
homologous
IL_8C3A_120
NA
IL_6OM7_2311/t/4499:4500,
1/t/4509:4511		Single bulged A
geometric
IL_7RQB_101
NA
IL_6OM7_2351/t/4558:4565,
1/t/4570:4576		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_116
NA
IL_6OM7_2371/t/4594:4599,
1/t/4624:4628		UAA/GAN related
homologous
IL_5TBW_118
NA
IL_6OM7_2381/t/4600:4602,
1/t/4621:4623		Isolated non-canonical cWW contact
geometric
IL_4V88_395
NA

Problematic loops

#loop idProblemSequence
IL_6OM7_252No text annotation
IL_6OM7_001Triple sheared with non-canonical cWW
IL_6OM7_002Single bulged A
IL_6OM7_003Minor groove platform
IL_6OM7_004Isolated non-canonical cWW pair
IL_6OM7_005Tandem non-canonical cWW pairs
IL_6OM7_295Isolated non-canonical cWW pair
IL_6OM7_253Isolated non-canonical cWW pair
IL_6OM7_296Single bulged A
IL_6OM7_008Isolated non-canonical cWW pair
IL_6OM7_009Minor groove platform related
IL_6OM7_010No text annotation
IL_6OM7_011Symmetric double minor groove platform
IL_6OM7_013Isolated non-canonical cWW pair
IL_6OM7_254Tandem non-canonical cWW pairs
IL_6OM7_014Isolated non-canonical cWW pair
IL_6OM7_016Isolated non-canonical cWW pair
IL_6OM7_017Isolated non-canonical cWW pair
IL_6OM7_018Double sheared
IL_6OM7_021No text annotation
IL_6OM7_022No text annotation
IL_6OM7_023Isolated non-canonical cWW pair
IL_6OM7_255No text annotation
IL_6OM7_024No text annotation
IL_6OM7_025Isolated non-canonical cWW with bulges
IL_6OM7_026No text annotation
IL_6OM7_027No text annotation
IL_6OM7_256No text annotation
IL_6OM7_028Tandem non-canonical cWW pairs
IL_6OM7_257No text annotation
IL_6OM7_029Tandem non-canonical cWW pairs
IL_6OM7_030No text annotation
IL_6OM7_031Single bulged A
IL_6OM7_032Single stack bend
IL_6OM7_036Isolated cWH basepair
IL_6OM7_037Isolated near basepair
IL_6OM7_297Single bulged U
IL_6OM7_038No text annotation
IL_6OM7_258C-loop with extra cWW pair
IL_6OM7_039No text annotation
IL_6OM7_298No text annotation
IL_6OM7_040No text annotation
IL_6OM7_042No text annotation
IL_6OM7_259No text annotation
IL_6OM7_044Single bulged U
IL_6OM7_050No text annotation
IL_6OM7_260No text annotation
IL_6OM7_051Isolated non-canonical cWW pair
IL_6OM7_299No text annotation
IL_6OM7_052No text annotation
IL_6OM7_053Isolated non-canonical cWW pair
IL_6OM7_054Isolated non-canonical cWW pair
IL_6OM7_261No text annotation
IL_6OM7_055Major groove platform; stack outside cWW
IL_6OM7_056Tandem non-canonical cWW pairs
IL_6OM7_262Single bulged U
IL_6OM7_057No text annotation
IL_6OM7_263Triple non-canonical cWW pairs
IL_6OM7_059No text annotation
IL_6OM7_302No text annotation
IL_6OM7_063No text annotation
IL_6OM7_064Tandem non-canonical cWW pairs
IL_6OM7_264No text annotation
IL_6OM7_065Isolated non-canonical cWW pair
IL_6OM7_066Minor groove platform
IL_6OM7_265Tandem non-canonical cWW pairs
IL_6OM7_068Isolated non-canonical cWW with bulges
IL_6OM7_069Isolated non-canonical cWW pair
IL_6OM7_070C-loop
IL_6OM7_071Isolated non-canonical cWW pair
IL_6OM7_267Tandem non-canonical cWW pairs
IL_6OM7_072Minor groove platform
IL_6OM7_073Isolated non-canonical cWW pair
IL_6OM7_268No text annotation
IL_6OM7_074No text annotation
IL_6OM7_075Tandem non-canonical cWW pairs
IL_6OM7_304No text annotation
IL_6OM7_076Single bulged U
IL_6OM7_077Isolated cWS basepair
IL_6OM7_079Isolated non-canonical cWW pair
IL_6OM7_270Single bulged A
IL_6OM7_271Minor groove platform
IL_6OM7_080Minor groove platform with extra cWW
IL_6OM7_081Tandem non-canonical cWW pairs
IL_6OM7_082Minor groove platform
IL_6OM7_083Multiple bulged bases
IL_6OM7_084Single bulged G
IL_6OM7_085Isolated non-canonical cWW pair
IL_6OM7_272No text annotation
IL_6OM7_086No text annotation
IL_6OM7_087Isolated non-canonical cWW pair
IL_6OM7_088No text annotation
IL_6OM7_093Tandem non-canonical cWW pairs
IL_6OM7_273No text annotation
IL_6OM7_096No text annotation
IL_6OM7_097Isolated non-canonical cWW pair
IL_6OM7_098Double sheared
IL_6OM7_099Isolated non-canonical cWW pair
IL_6OM7_100Triple sheared
IL_6OM7_101Isolated non-canonical cWW pair
IL_6OM7_102No text annotation
IL_6OM7_274No text annotation
IL_6OM7_1039x8 Sarcin-Ricin; G-bulge
IL_6OM7_106Isolated non-canonical cWW pair
IL_6OM7_107Tandem non-canonical cWW pairs
IL_6OM7_108No text annotation
IL_6OM7_275No text annotation
IL_6OM7_109No text annotation
IL_6OM7_110No text annotation
IL_6OM7_111Tandem non-canonical cWW pairs
IL_6OM7_112Isolated non-canonical cWW pair
IL_6OM7_113Single stack bend
IL_6OM7_307Isolated non-canonical cWW pair
IL_6OM7_276Tandem non-canonical cWW pairs
IL_6OM7_114No text annotation
IL_6OM7_115No text annotation
IL_6OM7_116Isolated non-canonical cWW pair
IL_6OM7_117Single stack bend
IL_6OM7_277Tandem non-canonical cWW pairs
IL_6OM7_118Single stack bend
IL_6OM7_119Tandem non-canonical cWW pairs
IL_6OM7_120No text annotation
IL_6OM7_278No text annotation
IL_6OM7_121No text annotation
IL_6OM7_122No text annotation
IL_6OM7_308No text annotation
IL_6OM7_279No text annotation
IL_6OM7_123Single stack bend
IL_6OM7_124Single bulged A
IL_6OM7_125Isolated non-canonical cWW with bulges
IL_6OM7_126Single stack bend
IL_6OM7_127Single bulged G
IL_6OM7_128No text annotation
IL_6OM7_129No text annotation
IL_6OM7_130No text annotation
IL_6OM7_280No text annotation
IL_6OM7_131Tandem non-canonical cWW pairs
IL_6OM7_132No text annotation
IL_6OM7_133Single stack bend
IL_6OM7_281No text annotation
IL_6OM7_134No text annotation
IL_6OM7_135No text annotation
IL_6OM7_136No text annotation
IL_6OM7_282No text annotation
IL_6OM7_137Single stack bend
IL_6OM7_138Isolated non-canonical cWW pair
IL_6OM7_139Isolated non-canonical cWW pair
IL_6OM7_140No text annotation
IL_6OM7_283No text annotation
IL_6OM7_141Major groove intercalation
IL_6OM7_142Triple sheared related
IL_6OM7_143Double sheared with non-canonical cWW
IL_6OM7_144Single bulged A
IL_6OM7_145Single stack bend
IL_6OM7_146Isolated non-canonical cWW pair
IL_6OM7_150No text annotation
IL_6OM7_151Single bulged U
IL_6OM7_153Isolated non-canonical cWW pair
IL_6OM7_154No text annotation
IL_6OM7_155180 degree turn
IL_6OM7_156Single bulged G
IL_6OM7_1575x5 Sarcin-Ricin with intercalated A; G-bulge
IL_6OM7_158Major groove platform with extra cWW
IL_6OM7_160Tandem non-canonical cWW pairs
IL_6OM7_161Isolated non-canonical cWW pair
IL_6OM7_162No text annotation
IL_6OM7_163Isolated cWS basepair
IL_6OM7_164Single bulged G
IL_6OM7_165Isolated non-canonical cWW pair
IL_6OM7_166No text annotation
IL_6OM7_167UAA/GAN
IL_6OM7_168SSU/LSU pseudoknot
IL_6OM7_284No text annotation
IL_6OM7_169No text annotation
IL_6OM7_170No text annotation
IL_6OM7_172Single bulged U
IL_6OM7_173Kink-turn
IL_6OM7_174No text annotation
IL_6OM7_175No text annotation
IL_6OM7_176Isolated cWS basepair
IL_6OM7_177Single bulged A
IL_6OM7_285Isolated near basepair
IL_6OM7_178Kink-turn
IL_6OM7_179Single bulged A
IL_6OM7_181Major groove platform; stack outside cWW
IL_6OM7_184Minor groove platform
IL_6OM7_190Isolated tHS basepair with bulges
IL_6OM7_193No text annotation
IL_6OM7_199Isolated non-canonical cWW pair
IL_6OM7_209No text annotation
IL_6OM7_311No text annotation
IL_6OM7_210Major groove platform with intercalation
IL_6OM7_287No text annotation
IL_6OM7_214Isolated non-canonical cWW pair
IL_6OM7_217Isolated tHS basepair with bulges
IL_6OM7_218Tandem non-canonical cWW pairs
IL_6OM7_219Single stack bend
IL_6OM7_222Major groove platform
IL_6OM7_312No text annotation
IL_6OM7_223No text annotation
IL_6OM7_224Triple sheared
IL_6OM7_225Major groove platform
IL_6OM7_232Isolated non-canonical cWW pair
IL_6OM7_233Double sheared
IL_6OM7_234Isolated non-canonical cWW pair
IL_6OM7_2889x8 Sarcin-Ricin with GA cWW pair; G-bulge
IL_6OM7_236No text annotation
IL_6OM7_289No text annotation
IL_6OM7_290Tandem non-canonical cWW pairs
IL_6OM7_239Multiple bulged bases
IL_6OM7_240UAA/GAN with extra cWW
IL_6OM7_241No text annotation
IL_6OM7_242No text annotation
IL_6OM7_291No text annotation
IL_6OM7_243Triple non-canonical cWW pairs
IL_6OM7_244No text annotation
IL_6OM7_245No text annotation
IL_6OM7_246Tandem non-canonical cWW pairs
IL_6OM7_247No text annotation
IL_6OM7_248Isolated non-canonical cWW pair
IL_6OM7_292No text annotation
IL_6OM7_249No text annotation
IL_6OM7_313No text annotation
IL_6OM7_250No text annotation
IL_6OM7_314Double sheared
IL_6OM7_293No text annotation
IL_6OM7_251Single base bend

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6OM7_0321/D/21:24,
1/t/345:361,
1/t/368:373		No text annotation
geometric
J3_5TBW_061
NA
J3_6OM7_0021/D/44:45,
1/D/58:64,
1/D/95:99		No text annotation
homologous
J3_8C3A_060
NA
J3_6OM7_0511/D/44:55,
1/D/62:64,
1/D/95:99		No text annotation
geometric
J3_4WF9_001
J3_47707.1
J3_6OM7_0041/S2/40:41,
1/S2/481:489,
1/S2/511:514		No text annotation
J3_6OM7_0521/S2/40:47,
1/S2/479:487,
1/S2/512:514		No text annotation
homologous
J3_8CRE_072
J3_63856.1
J3_6OM7_0051/S2/682:685,
1/S2/917:922,
1/S2/1022:1023		No text annotation
J3_6OM7_0351/S2/682:685,
1/S2/917:923,
1/S2/1019:1023		No text annotation
J3_6OM7_0071/S2/938:941,
1/S2/985:993,
1/S2/1000:1004		No text annotation
homologous
J3_4V88_033
NA
J3_6OM7_0081/S2/1094:1096,
1/S2/1136:1140,
1/S2/1147:1151		No text annotation
J3_6OM7_0191/t/1513:1519,
1/t/1604:1606,
1/t/1622:1625		No text annotation
homologous
J3_8C3A_003
NA
J3_6OM7_0201/t/1527:1530,
1/t/1562:1566,
1/t/1591:1596		No text annotation
homologous
J3_5TBW_005
NA
J3_6OM7_0221/t/2372:2378,
1/t/2784:2786,
1/t/2798:2801		No text annotation
homologous
J3_5TBW_008
NA
J3_6OM7_0231/t/2381:2384,
1/t/2764:2770,
1/t/2779:2781		No text annotation
homologous
J3_8C3A_007
NA
J3_6OM7_0241/t/2419:2424,
1/t/2494:2498,
1/t/2515:2516		No text annotation
homologous
J3_5TBW_010
NA
J3_6OM7_0461/t/2430:2435,
1/t/2444:2455,
1/t/2480:2487		No text annotation
homologous
J3_8C3A_053
NA
J3_6OM7_0251/t/2530:2534,
1/t/2551:2554,
1/t/2736:2746		No text annotation
J3_6OM7_0261/t/2554:2555,
1/t/2564:2568,
1/t/2735:2736		No text annotation
homologous
J3_8C3A_054
NA
J3_6OM7_0471/t/2577:2581,
1/t/2716:2717,
1/t/2721:2726		No text annotation
homologous
J3_8P9A_058
J3_08594.1
J3_6OM7_0271/t/3908:3910,
1/t/4044:4048,
1/t/4130:4135		Kink-turn 3-way junction
geometric
J3_5J7L_044
NA
J3_6OM7_0481/t/4061:4072,
1/t/4076:4098,
1/t/4117:4120		No text annotation
J3_6OM7_0291/t/4425:4428,
1/t/4453:4455,
1/t/4469:4475		No text annotation
homologous
J3_8P9A_063
J3_44047.1
J4_6OM7_0011/S2/98:106,
1/S2/355:357,
1/S2/405:409,
1/S2/431:432		No text annotation
homologous
J4_8P9A_021
J4_15241.2
J4_6OM7_0021/S2/671:673,
1/S2/1032:1037,
1/S2/1078:1089,
1/S2/1160:1161		No text annotation
homologous
J4_8C3A_022
NA
J4_6OM7_0071/t/2344:2350,
1/t/2368:2370,
1/t/2803:2808,
1/t/3827:3828		No text annotation
J4_6OM7_0081/t/2385:2389,
1/t/2413:2418,
1/t/2517:2518,
1/t/2756:2763		No text annotation
J4_6OM7_0091/t/2388:2389,
1/t/2413:2418,
1/t/2517:2518,
1/t/2756:2762		No text annotation
J4_6OM7_0111/t/3605:3609,
1/t/3621:3625,
1/t/3661:3665,
1/t/3792:3797		No text annotation
homologous
J4_8P9A_017
J4_78485.1
J4_6OM7_0121/t/3667:3669,
1/t/3723:3724,
1/t/3742:3751,
1/t/3785:3790		No text annotation
homologous
J4_8P9A_018
J4_42306.1
J4_6OM7_0151/u/7:10,
1/u/25:28,
1/u/42:49,
1/u/65:66		No text annotation
homologous
J4_7E8O_001
NA
J5_6OM7_0011/S2/30:34,
1/S2/521:527,
1/S2/558:563,
1/S2/592:595,
1/S2/641:644		No text annotation
homologous
J5_8C3A_018
NA
J5_6OM7_0021/S2/30:34,
1/S2/521:527,
1/S2/558:565,
1/S2/585:595,
1/S2/641:644		No text annotation
J5_6OM7_0031/S2/53:56,
1/S2/89:96,
1/S2/434:436,
1/S2/457:459,
1/S2/470:474		No text annotation
homologous
J5_8C3A_020
NA
J5_6OM7_0051/t/1318:1323,
1/t/1498:1501,
1/t/1640:1643,
1/t/2267:2269,
1/t/2324:2330		No text annotation
J5_6OM7_0061/t/2385:2389,
1/t/2413:2424,
1/t/2494:2498,
1/t/2515:2518,
1/t/2756:2763		No text annotation
J5_6OM7_0071/t/2834:2842,
1/t/2866:2867,
1/t/3584:3585,
1/t/3589:3597,
1/t/3806:3808		No text annotation
homologous
J5_8P9A_013
J5_99177.1
J5_6OM7_0081/t/3874:3881,
1/t/4354:4362,
1/t/4406:4415,
1/t/4490:4496,
1/t/4514:4519		No text annotation
J5_6OM7_0091/t/3891:3894,
1/t/4150:4153,
1/t/4166:4167,
1/t/4189:4190,
1/t/4337:4343		No text annotation
homologous
J5_8P9A_015
J5_96125.1
J6_6OM7_0021/t/3891:3894,
1/t/4150:4153,
1/t/4166:4167,
1/t/4189:4192,
1/t/4293:4304,
1/t/4332:4343		No text annotation
J7_6OM7_0011/t/1648:1653,
1/t/1666:1667,
1/t/1833:1836,
1/t/1860:1865,
1/t/1876:1880,
1/t/2058:2059,
1/t/2257:2262		No text annotation
J9_6OM7_0011/D/33:42,
1/D/101:106,
1/D/113:114,
1/D/136:138,
1/t/19:26,
1/t/57:67,
1/t/74:78,
1/t/105:109,
1/t/326:333		No text annotation
J9_6OM7_0021/D/33:42,
1/D/101:106,
1/D/113:114,
1/D/136:138,
1/t/19:27,
1/t/55:67,
1/t/74:78,
1/t/105:109,
1/t/326:333		No text annotation

Problematic loops

#loop idProblemSequence
J3_6OM7_001No text annotation
J3_6OM7_031No text annotation
J3_6OM7_033No text annotation
J3_6OM7_003No text annotation
J3_6OM7_034No text annotation
J3_6OM7_006No text annotation
J3_6OM7_036No text annotation
J3_6OM7_037No text annotation
J3_6OM7_038No text annotation
J3_6OM7_039No text annotation
J3_6OM7_009No text annotation
J3_6OM7_010No text annotation
J3_6OM7_011No text annotation
J3_6OM7_012No text annotation
J3_6OM7_040No text annotation
J3_6OM7_013No text annotation
J3_6OM7_014No text annotation
J3_6OM7_015No text annotation
J3_6OM7_016No text annotation
J3_6OM7_041No text annotation
J3_6OM7_017No text annotation
J3_6OM7_042No text annotation
J3_6OM7_018No text annotation
J3_6OM7_043No text annotation
J3_6OM7_044No text annotation
J3_6OM7_021No text annotation
J3_6OM7_045No text annotation
J3_6OM7_049No text annotation
J3_6OM7_028No text annotation
J3_6OM7_050No text annotation
J3_6OM7_030No text annotation
J4_6OM7_017No text annotation
J4_6OM7_003No text annotation
J4_6OM7_004No text annotation
J4_6OM7_005No text annotation
J4_6OM7_006No text annotation
J4_6OM7_010No text annotation
J4_6OM7_018No text annotation
J4_6OM7_013No text annotation
J4_6OM7_014No text annotation
J4_6OM7_019No text annotation
J4_6OM7_016No text annotation
J5_6OM7_010No text annotation
J5_6OM7_004No text annotation
J6_6OM7_001No text annotation

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