HL_6OM7_073

3D structure

PDB id

6OM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCAUGGAAGUCGG

Length

13 nucleotides

Bulged bases

6OM7|1|t|U|1961, 6OM7|1|t|G|1962, 6OM7|1|t|G|1963, 6OM7|1|t|A|1964, 6OM7|1|t|A|1965, 6OM7|1|t|G|1966, 6OM7|1|t|U|1967

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OM7_073 not in the Motif Atlas

Geometric match to HL_4V9F_004

Geometric discrepancy: 0.3914

The information below is about HL_4V9F_004

Detailed Annotation

Mini UNCG related

Broad Annotation

Mini UNCG related

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

6OM7|1|t|C|1958
6OM7|1|t|C|1959
6OM7|1|t|A|1960
6OM7|1|t|U|1961
6OM7|1|t|G|1962
6OM7|1|t|G|1963
6OM7|1|t|A|1964
6OM7|1|t|A|1965
6OM7|1|t|G|1966
6OM7|1|t|U|1967
6OM7|1|t|C|1968
6OM7|1|t|G|1969
6OM7|1|t|G|1970

Current chains

Chain t

28S ribosomal RNA

Nearby chains