HL_6OM7_115

3D structure

PDB id

6OM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6OM7|1|t|G|4656, 6OM7|1|t|C|4660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OM7_115 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1052

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6OM7|1|t|C|4650
6OM7|1|t|U|4651
6OM7|1|t|G|4652
6OM7|1|t|A|4653
6OM7|1|t|A|4654
6OM7|1|t|C|4655
6OM7|1|t|G|4656
6OM7|1|t|C|4657
6OM7|1|t|C|4658
6OM7|1|t|U|4659
6OM7|1|t|C|4660
6OM7|1|t|U|4661
6OM7|1|t|A|4662
6OM7|1|t|A|4663
6OM7|1|t|G|4664

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain J

60S ribosomal protein L9

Chain P

60S ribosomal protein L13a

Chain n

60S ribosomal protein L40