HL_6OM7_117

3D structure

PDB id

6OM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAAGGC

Length

8 nucleotides

Bulged bases

6OM7|1|t|A|4868, 6OM7|1|t|A|4869, 6OM7|1|t|G|4871

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OM7_117 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.1681

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6OM7|1|t|G|4865
6OM7|1|t|G|4866
6OM7|1|t|A|4867
6OM7|1|t|A|4868
6OM7|1|t|A|4869
6OM7|1|t|G|4870
6OM7|1|t|G|4871
6OM7|1|t|C|4872

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L13a