HL_6OM7_118

3D structure

PDB id

6OM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

6OM7|1|t|U|4934

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OM7_118 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.2013

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

6OM7|1|t|G|4933
6OM7|1|t|U|4934
6OM7|1|t|A|4935
6OM7|1|t|G|4936
6OM7|1|t|A|4937
6OM7|1|t|C|4938
6OM7|1|t|G|4939
6OM7|1|t|A|4940
6OM7|1|t|C|4941

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain Q

60S ribosomal protein L17

Chain e

60S ribosomal protein L31