HL_6OPE_045

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

6OPE|1|RA|A|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OPE_045 not in the Motif Atlas

Homologous match to HL_7A0S_007

Geometric discrepancy: 0.3809

The information below is about HL_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6OPE|1|RA|A|225
6OPE|1|RA|G|226
6OPE|1|RA|A|227
6OPE|1|RA|A|228
6OPE|1|RA|A|229
6OPE|1|RA|U|230

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RP

50S ribosomal protein L15