HL_6OPE_050

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

6OPE|1|RA|G|329, 6OPE|1|RA|A|330, 6OPE|1|RA|A|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OPE_050 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0857

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6OPE|1|RA|G|327
6OPE|1|RA|U|328
6OPE|1|RA|G|329
6OPE|1|RA|A|330
6OPE|1|RA|A|331
6OPE|1|RA|A|332
6OPE|1|RA|G|333
6OPE|1|RA|C|334
6OPE|1|RA|C|335

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24