HL_6OPE_072

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

6OPE|1|RA|G|1325, 6OPE|1|RA|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OPE_072 not in the Motif Atlas

Homologous match to HL_7RQB_034

Geometric discrepancy: 0.101

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

6OPE|1|RA|G|1324
6OPE|1|RA|G|1325
6OPE|1|RA|U|1326
6OPE|1|RA|C|1327
6OPE|1|RA|G|1328
6OPE|1|RA|U|1329
6OPE|1|RA|C|1330

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RR

50S ribosomal protein L17

Chain RW

50S ribosomal protein L22