HL_6OPE_089

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases (A, C, G, U)

2030A, 2031A, 2032G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OPE_089 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0964

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

6OPE|1|RA|G|2027
6OPE|1|RA|U|2028
6OPE|1|RA|G|2029
6OPE|1|RA|A|2030
6OPE|1|RA|A|2031
6OPE|1|RA|G|2032
6OPE|1|RA|A|2033
6OPE|1|RA|U|2034
6OPE|1|RA|G|2035
6OPE|1|RA|C|2036

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R5

50S ribosomal protein L32

Chain RE

50S ribosomal protein L3