HL_6OPE_100

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

6OPE|1|RA|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OPE_100 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.0836

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

6OPE|1|RA|U|2528
6OPE|1|RA|G|2529
6OPE|1|RA|A|2530
6OPE|1|RA|A|2531
6OPE|1|RA|G|2532
6OPE|1|RA|A|2533
6OPE|1|RA|A|2534
6OPE|1|RA|G|2535

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6