HL_6OPE_224

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGUUCGAUCCCG

Length

13 nucleotides

Bulged bases

6OPE|1|QY|U|55

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OPE_224 not in the Motif Atlas

Homologous match to HL_5EL4_250

Geometric discrepancy: 0.5578

The information below is about HL_5EL4_250

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25222.2

Basepair signature

cWW-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

6OPE|1|QY|C|51
6OPE|1|QY|G|52
6OPE|1|QY|G|53
6OPE|1|QY|U|54
6OPE|1|QY|U|55
6OPE|1|QY|C|56
6OPE|1|QY|G|57
6OPE|1|QY|A|58
6OPE|1|QY|U|59
6OPE|1|QY|C|60
6OPE|1|QY|C|61
6OPE|1|QY|C|62
6OPE|1|QY|G|63

Current chains

Chain QY

A-site tRNAAla(GGC) U32-A38

Nearby chains

Chain RA

Large subunit ribosomal RNA; LSU rRNA

Chain RQ

50S ribosomal protein L16

Chain RZ

50S ribosomal protein L25