HL_6ORD_087

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6ORD|1|RA|A|2030, 6ORD|1|RA|A|2031, 6ORD|1|RA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ORD_087 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0602

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

6ORD|1|RA|G|2027
6ORD|1|RA|U|2028
6ORD|1|RA|G|2029
6ORD|1|RA|A|2030
6ORD|1|RA|A|2031
6ORD|1|RA|G|2032
6ORD|1|RA|A|2033
6ORD|1|RA|U|2034
6ORD|1|RA|G|2035
6ORD|1|RA|C|2036

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R5

50S ribosomal protein L32

Chain RE

50S ribosomal protein L3