HL_6ORD_173

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

6ORD|1|YA|U|958, 6ORD|1|YA|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ORD_173 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.0703

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6ORD|1|YA|C|955
6ORD|1|YA|G|956
6ORD|1|YA|A|957
6ORD|1|YA|U|958
6ORD|1|YA|A|959
6ORD|1|YA|A|960
6ORD|1|YA|C|961
6ORD|1|YA|G|962

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YB

5S ribosomal RNA; 5S rRNA

Chain YQ

50S ribosomal protein L16