HL_6ORL_076

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ORL_076 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1388

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6ORL|1|2|A|320
6ORL|1|2|A|321
6ORL|1|2|C|322
6ORL|1|2|U|323
6ORL|1|2|G|324
6ORL|1|2|A|325
6ORL|1|2|G|326
6ORL|1|2|A|327
6ORL|1|2|C|328
6ORL|1|2|A|329
6ORL|1|2|C|330
6ORL|1|2|G|331
6ORL|1|2|G|332
6ORL|1|2|U|333

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain y

30S ribosomal protein S20