HL_6ORL_086

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

6ORL|1|2|U|842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ORL_086 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3734

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6ORL|1|2|C|840
6ORL|1|2|C|841
6ORL|1|2|U|842
6ORL|1|2|U|843
6ORL|1|2|G|844
6ORL|1|2|A|845
6ORL|1|2|G|846

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain w

30S ribosomal protein S18