3D structure

PDB id
6ORL (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF1 pre-accommodated 70S complex at 24 ms
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CUGCAACUCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6ORL_096 not in the Motif Atlas
Homologous match to HL_5J7L_028
Geometric discrepancy: 0.1321
The information below is about HL_5J7L_028
Detailed Annotation
T-loop with 3 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_02887.3
Basepair signature
cWW-tWH-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

6ORL|1|2|C|1314
6ORL|1|2|U|1315
6ORL|1|2|G|1316
6ORL|1|2|C|1317
6ORL|1|2|A|1318
6ORL|1|2|A|1319
6ORL|1|2|C|1320
6ORL|1|2|U|1321
6ORL|1|2|C|1322
6ORL|1|2|G|1323

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain r
30S ribosomal protein S13
Chain s
30S ribosomal protein S14
Chain x
30S ribosomal protein S19

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