HL_6ORL_108

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGCAAAUCC

Length

9 nucleotides

Bulged bases

6ORL|1|1|C|1493, 6ORL|1|1|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ORL_108 not in the Motif Atlas

Geometric match to HL_2A43_001

Geometric discrepancy: 0.3716

The information below is about HL_2A43_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6ORL|1|1|G|1491
6ORL|1|1|G|1492
6ORL|1|1|C|1493
6ORL|1|1|A|1494
6ORL|1|1|A|1495
6ORL|1|1|A|1496
6ORL|1|1|U|1497
6ORL|1|1|C|1498
6ORL|1|1|C|1499

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2