HL_6OSI_006

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

6OSI|1|QA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OSI_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.2036

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6OSI|1|QA|G|259
6OSI|1|QA|G|260
6OSI|1|QA|U|261
6OSI|1|QA|A|262
6OSI|1|QA|A|263
6OSI|1|QA|U|264
6OSI|1|QA|G|265
6OSI|1|QA|G|266
6OSI|1|QA|C|267

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QQ

30S ribosomal protein S17

Chain QT

30S ribosomal protein S20