HL_6OSI_042

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

GAGAAAUC

Length

8 nucleotides

Bulged bases

6OSI|1|RA|A|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OSI_042 not in the Motif Atlas

Geometric match to HL_6WBR_004

Geometric discrepancy: 0.3842

The information below is about HL_6WBR_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78347.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6OSI|1|RA|G|224
6OSI|1|RA|A|225
6OSI|1|RA|G|226
6OSI|1|RA|A|227
6OSI|1|RA|A|228
6OSI|1|RA|A|229
6OSI|1|RA|U|230
6OSI|1|RA|C|231

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RP

50S ribosomal protein L15