HL_6OSI_176

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

6OSI|1|YA|G|1325, 6OSI|1|YA|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OSI_176 not in the Motif Atlas

Homologous match to HL_7A0S_033

Geometric discrepancy: 0.0969

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6OSI|1|YA|G|1324
6OSI|1|YA|G|1325
6OSI|1|YA|U|1326
6OSI|1|YA|C|1327
6OSI|1|YA|G|1328
6OSI|1|YA|U|1329
6OSI|1|YA|C|1330

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YR

50S ribosomal protein L17

Chain YW

50S ribosomal protein L22