HL_6OSI_193

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6OSI|1|YA|A|2030, 6OSI|1|YA|A|2031, 6OSI|1|YA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OSI_193 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.1133

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

6OSI|1|YA|G|2027
6OSI|1|YA|U|2028
6OSI|1|YA|G|2029
6OSI|1|YA|A|2030
6OSI|1|YA|A|2031
6OSI|1|YA|G|2032
6OSI|1|YA|A|2033
6OSI|1|YA|U|2034
6OSI|1|YA|G|2035
6OSI|1|YA|C|2036

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y5

50S ribosomal protein L32

Chain YE

50S ribosomal protein L3