HL_6OSI_216

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

GCUAACGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OSI_216 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.2229

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

6OSI|1|QA|G|861
6OSI|1|QA|C|862
6OSI|1|QA|U|863
6OSI|1|QA|A|864
6OSI|1|QA|A|865
6OSI|1|QA|C|866
6OSI|1|QA|G|867
6OSI|1|QA|C|868

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QE

30S ribosomal protein S5

Chain QH

30S ribosomal protein S8

Chain QX

mRNA