HL_6OSI_222

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OSI_222 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.4549

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6OSI|1|RA|G|2304
6OSI|1|RA|A|2305
6OSI|1|RA|C|2306
6OSI|1|RA|G|2307
6OSI|1|RA|G|2308
6OSI|1|RA|A|2309
6OSI|1|RA|A|2310
6OSI|1|RA|A|2311
6OSI|1|RA|U|2312

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RG

50S ribosomal protein L5