3D structure

PDB id
6OSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF1 accommodated 70S complex at 60 ms
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
G(PSU)AAC(3TD)A(PSU)AAC
Length
11 nucleotides
Bulged bases
6OSK|1|1|A|1913, 6OSK|1|1|C|1914, 6OSK|1|1|A|1916
QA status
Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OSK_047 not in the Motif Atlas
Homologous match to HL_5J7L_181
Geometric discrepancy: 0.1643
The information below is about HL_5J7L_181
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_25847.2
Basepair signature
cWW-F-cSH-tHW-F-F-F
Number of instances in this motif group
3

Unit IDs

6OSK|1|1|G|1910
6OSK|1|1|PSU|1911
6OSK|1|1|A|1912
6OSK|1|1|A|1913
6OSK|1|1|C|1914
6OSK|1|1|3TD|1915
6OSK|1|1|A|1916
6OSK|1|1|PSU|1917
6OSK|1|1|A|1918
6OSK|1|1|A|1919
6OSK|1|1|C|1920

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain 5
Transfer RNA; tRNA
Chain A
Peptide chain release factor 1

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