HL_6OTR_015
3D structure
- PDB id
- 6OTR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OTR_015 not in the Motif Atlas
- Homologous match to HL_4LFB_015
- Geometric discrepancy: 0.1484
- The information below is about HL_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
6OTR|1|QA|C|689
6OTR|1|QA|G|690
6OTR|1|QA|G|691
6OTR|1|QA|U|692
6OTR|1|QA|G|693
6OTR|1|QA|A|694
6OTR|1|QA|A|695
6OTR|1|QA|A|696
6OTR|1|QA|U|697
6OTR|1|QA|G|698
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QG
- 30S ribosomal protein S7
- Chain QK
- 30S ribosomal protein S11
- Chain QW
- Transfer RNA; tRNA
- Chain QX
- mRNA
- Chain RA
- Large subunit ribosomal RNA; LSU rRNA
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