HL_6OTR_068

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

6OTR|1|RA|A|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OTR_068 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2867

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6OTR|1|RA|C|1092
6OTR|1|RA|G|1093
6OTR|1|RA|U|1094
6OTR|1|RA|A|1095
6OTR|1|RA|A|1096
6OTR|1|RA|U|1097
6OTR|1|RA|A|1098
6OTR|1|RA|G|1099

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6