HL_6OTR_099
3D structure
- PDB id
- 6OTR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- CGUCCACAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OTR_099 not in the Motif Atlas
- Homologous match to HL_4WF9_056
- Geometric discrepancy: 0.2236
- The information below is about HL_4WF9_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_52011.1
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
6OTR|1|RA|C|2471
6OTR|1|RA|G|2472
6OTR|1|RA|U|2473
6OTR|1|RA|C|2474
6OTR|1|RA|C|2475
6OTR|1|RA|A|2476
6OTR|1|RA|C|2477
6OTR|1|RA|A|2478
6OTR|1|RA|G|2479
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R9
- 50S ribosomal protein L36
- Chain RH
- 50S ribosomal protein L6
- Chain RQ
- 50S ribosomal protein L16
Coloring options: