HL_6OTR_124

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OTR_124 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.1054

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_92337.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

6OTR|1|XA|G|617
6OTR|1|XA|C|618
6OTR|1|XA|U|619
6OTR|1|XA|C|620
6OTR|1|XA|A|621
6OTR|1|XA|A|622
6OTR|1|XA|C|623

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4

Chain XP

30S ribosomal protein S16