HL_6OTR_136

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

6OTR|1|XA|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OTR_136 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.3946

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

6OTR|1|XA|G|1134
6OTR|1|XA|U|1135
6OTR|1|XA|U|1136
6OTR|1|XA|C|1137
6OTR|1|XA|G|1138
6OTR|1|XA|G|1139
6OTR|1|XA|C|1140

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XI

30S ribosomal protein S9