HL_6OTR_146

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GCAGCCUGGUAGC

Length

13 nucleotides

Bulged bases

6OTR|1|XW|C|16, 6OTR|1|XW|G|18, 6OTR|1|XW|G|19, 6OTR|1|XW|U|20, 6OTR|1|XW|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OTR_146 not in the Motif Atlas

Homologous match to HL_6ORD_035

Geometric discrepancy: 0.5453

The information below is about HL_6ORD_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07951.1

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6OTR|1|XW|G|12
6OTR|1|XW|C|13
6OTR|1|XW|A|14
6OTR|1|XW|G|15
6OTR|1|XW|C|16
6OTR|1|XW|C|17
6OTR|1|XW|U|17|||A
6OTR|1|XW|G|18
6OTR|1|XW|G|19
6OTR|1|XW|U|20
6OTR|1|XW|A|21
6OTR|1|XW|G|22
6OTR|1|XW|C|23

Current chains

Chain XW

tRNA-fMet

Nearby chains

Chain XK

30S ribosomal protein S11

Chain YA

Large subunit ribosomal RNA; LSU rRNA