3D structure

PDB id
6OTR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
Experimental method
X-RAY DIFFRACTION
Resolution
3.12 Å

Loop

Sequence
GGUCGUC
Length
7 nucleotides
Bulged bases
6OTR|1|YA|G|1325, 6OTR|1|YA|U|1329
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OTR_182 not in the Motif Atlas
Homologous match to HL_7RQB_034
Geometric discrepancy: 0.0732
The information below is about HL_7RQB_034
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_46680.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
27

Unit IDs

6OTR|1|YA|G|1324
6OTR|1|YA|G|1325
6OTR|1|YA|U|1326
6OTR|1|YA|C|1327
6OTR|1|YA|G|1328
6OTR|1|YA|U|1329
6OTR|1|YA|C|1330

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YR
50S ribosomal protein L17
Chain YW
50S ribosomal protein L22

Coloring options:


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