HL_6OTR_192

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

UGAUGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OTR_192 not in the Motif Atlas

Homologous match to HL_9DFE_041

Geometric discrepancy: 0.5831

The information below is about HL_9DFE_041

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6OTR|1|YA|U|1727
6OTR|1|YA|G|1728
6OTR|1|YA|A|1729
6OTR|1|YA|U|1730
6OTR|1|YA|G|1731
6OTR|1|YA|A|1732
6OTR|1|YA|G|1733

Current chains

Chain YA

23S rRNA

Nearby chains