HL_6OXA_014

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXA_014 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.1161

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_92337.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

6OXA|1|QA|G|617
6OXA|1|QA|C|618
6OXA|1|QA|U|619
6OXA|1|QA|C|620
6OXA|1|QA|A|621
6OXA|1|QA|A|622
6OXA|1|QA|C|623

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QP

30S ribosomal protein S16