HL_6OXA_047

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

6OXA|1|RA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXA_047 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.1332

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

6OXA|1|RA|U|305
6OXA|1|RA|U|306
6OXA|1|RA|G|307
6OXA|1|RA|G|308
6OXA|1|RA|G|309
6OXA|1|RA|A|310
6OXA|1|RA|A|311
6OXA|1|RA|G|312

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RY

50S ribosomal protein L24