HL_6OXA_071

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXA_071 not in the Motif Atlas

Homologous match to HL_7RQB_033

Geometric discrepancy: 0.1239

The information below is about HL_7RQB_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

6OXA|1|RA|G|1281
6OXA|1|RA|U|1282
6OXA|1|RA|G|1283
6OXA|1|RA|A|1284
6OXA|1|RA|G|1285
6OXA|1|RA|A|1286
6OXA|1|RA|A|1287
6OXA|1|RA|U|1288
6OXA|1|RA|C|1289

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R5

50S ribosomal protein L32

Chain RR

50S ribosomal protein L17

Chain RW

50S ribosomal protein L22