HL_6OXA_077

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGUACG

Length

6 nucleotides

Bulged bases

6OXA|1|RA|G|1534, 6OXA|1|RA|U|1535, 6OXA|1|RA|A|1536, 6OXA|1|RA|C|1537

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXA_077 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2877

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6OXA|1|RA|C|1533
6OXA|1|RA|G|1534
6OXA|1|RA|U|1535
6OXA|1|RA|A|1536
6OXA|1|RA|C|1537
6OXA|1|RA|G|1538

Current chains

Chain RA

23S rRNA

Nearby chains