HL_6OXA_087

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

6OXA|1|RA|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXA_087 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1107

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6OXA|1|RA|G|1910
6OXA|1|RA|U|1911
6OXA|1|RA|A|1912
6OXA|1|RA|A|1913
6OXA|1|RA|C|1914
6OXA|1|RA|U|1915
6OXA|1|RA|A|1916
6OXA|1|RA|U|1917
6OXA|1|RA|A|1918
6OXA|1|RA|A|1919
6OXA|1|RA|C|1920

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain QV

Transfer RNA; tRNA

Chain QY

Addiction module toxin, Txe/YoeB family