HL_6OXA_093

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6OXA|1|RA|A|2268, 6OXA|1|RA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXA_093 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0806

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6OXA|1|RA|C|2264
6OXA|1|RA|U|2265
6OXA|1|RA|A|2266
6OXA|1|RA|A|2267
6OXA|1|RA|A|2268
6OXA|1|RA|A|2269
6OXA|1|RA|G|2270
6OXA|1|RA|G|2271
6OXA|1|RA|U|2272
6OXA|1|RA|A|2273
6OXA|1|RA|A|2274
6OXA|1|RA|C|2275
6OXA|1|RA|G|2276

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R0

50S ribosomal protein L27

Chain RQ

50S ribosomal protein L16