HL_6OXA_131
3D structure
- PDB id
- 6OXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- GAAGCAACGC
- Length
- 10 nucleotides
- Bulged bases
- 6OXA|1|XA|G|971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OXA_131 not in the Motif Atlas
- Homologous match to HL_4LFB_021
- Geometric discrepancy: 0.1004
- The information below is about HL_4LFB_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6OXA|1|XA|G|963
6OXA|1|XA|A|964
6OXA|1|XA|A|965
6OXA|1|XA|G|966
6OXA|1|XA|C|967
6OXA|1|XA|A|968
6OXA|1|XA|A|969
6OXA|1|XA|C|970
6OXA|1|XA|G|971
6OXA|1|XA|C|972
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XI
- 30S ribosomal protein S9
- Chain XJ
- 30S ribosomal protein S10
- Chain XM
- 30S ribosomal protein S13
- Chain XN
- 30S ribosomal protein S14 type Z
- Chain XV
- Transfer RNA; tRNA
- Chain XY
- Addiction module toxin, Txe/YoeB family
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