HL_6OXA_168

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

6OXA|1|YA|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXA_168 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.2462

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6OXA|1|YA|C|641
6OXA|1|YA|G|642
6OXA|1|YA|A|643
6OXA|1|YA|A|644
6OXA|1|YA|C|645
6OXA|1|YA|A|646
6OXA|1|YA|G|647

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y6

50S ribosomal protein L33

Chain Y8

50S ribosomal protein L35