HL_6OXA_172

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUUUAGGG

Length

8 nucleotides

Bulged bases

6OXA|1|YA|U|827, 6OXA|1|YA|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXA_172 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.183

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6OXA|1|YA|C|825
6OXA|1|YA|U|826
6OXA|1|YA|U|827
6OXA|1|YA|U|828
6OXA|1|YA|A|829
6OXA|1|YA|G|830
6OXA|1|YA|G|831
6OXA|1|YA|G|832

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y0

50S ribosomal protein L27

Chain YP

50S ribosomal protein L15