HL_6OXA_181

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

6OXA|1|YA|G|1325, 6OXA|1|YA|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXA_181 not in the Motif Atlas

Homologous match to HL_7A0S_033

Geometric discrepancy: 0.0727

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

6OXA|1|YA|G|1324
6OXA|1|YA|G|1325
6OXA|1|YA|U|1326
6OXA|1|YA|C|1327
6OXA|1|YA|G|1328
6OXA|1|YA|U|1329
6OXA|1|YA|C|1330

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YR

50S ribosomal protein L17

Chain YW

50S ribosomal protein L22