3D structure

PDB id
6OXA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)
Experimental method
X-RAY DIFFRACTION
Resolution
3.25 Å

Loop

Sequence
CUCCAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OXA_213 not in the Motif Atlas
Homologous match to HL_7RQB_065
Geometric discrepancy: 0.2956
The information below is about HL_7RQB_065
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_53171.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
18

Unit IDs

6OXA|1|YA|C|2701
6OXA|1|YA|U|2702
6OXA|1|YA|C|2703
6OXA|1|YA|C|2704
6OXA|1|YA|A|2705
6OXA|1|YA|G|2706

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YR
50S ribosomal protein L17

Coloring options:


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