HL_6OXA_231
3D structure
- PDB id
- 6OXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- GACGGAAAU
- Length
- 9 nucleotides
- Bulged bases
- 6OXA|1|YA|G|2308
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OXA_231 not in the Motif Atlas
- Homologous match to HL_9DFE_198
- Geometric discrepancy: 0.4073
- The information below is about HL_9DFE_198
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02452.1
- Basepair signature
- cWW-F-cWH-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6OXA|1|YA|G|2304
6OXA|1|YA|A|2305
6OXA|1|YA|C|2306
6OXA|1|YA|G|2307
6OXA|1|YA|G|2308
6OXA|1|YA|A|2309
6OXA|1|YA|A|2310
6OXA|1|YA|A|2311
6OXA|1|YA|U|2312
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YG
- 50S ribosomal protein L5
Coloring options: