HL_6OXI_086

3D structure

PDB id

6OXI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6OXI|1|RA|A|2030, 6OXI|1|RA|A|2031, 6OXI|1|RA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXI_086 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0916

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

6OXI|1|RA|G|2027
6OXI|1|RA|U|2028
6OXI|1|RA|G|2029
6OXI|1|RA|A|2030
6OXI|1|RA|A|2031
6OXI|1|RA|G|2032
6OXI|1|RA|A|2033
6OXI|1|RA|U|2034
6OXI|1|RA|G|2035
6OXI|1|RA|C|2036

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R5

50S ribosomal protein L32

Chain RE

50S ribosomal protein L3