HL_6OXI_120

3D structure

PDB id

6OXI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXI_120 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2809

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6OXI|1|XA|C|522
6OXI|1|XA|A|523
6OXI|1|XA|G|524
6OXI|1|XA|C|525
6OXI|1|XA|C|526
6OXI|1|XA|G|527

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12