HL_6OXI_181

3D structure

PDB id

6OXI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

CGUACG

Length

6 nucleotides

Bulged bases

6OXI|1|YA|C|1537

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXI_181 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2662

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6OXI|1|YA|C|1533
6OXI|1|YA|G|1534
6OXI|1|YA|U|1535
6OXI|1|YA|A|1536
6OXI|1|YA|C|1537
6OXI|1|YA|G|1538

Current chains

Chain YA

23S rRNA

Nearby chains