HL_6P4G_004

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUGGGCAGUU

Length

11 nucleotides

Bulged bases

6P4G|1|1|U|6562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P4G_004 not in the Motif Atlas

Geometric match to HL_4V83_139

Geometric discrepancy: 0.352

The information below is about HL_4V83_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53597.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

6P4G|1|1|A|6560
6P4G|1|1|C|6561
6P4G|1|1|U|6562
6P4G|1|1|G|6563
6P4G|1|1|G|6564
6P4G|1|1|G|6565
6P4G|1|1|C|6566
6P4G|1|1|A|6567
6P4G|1|1|G|6568
6P4G|1|1|U|6569
6P4G|1|1|U|6570

Current chains

Chain 1

IAPV-IRES

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain Q

uS19

Chain f

eS30